IL_9TEZ_067

3D structure

PDB id

9TEZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

DalDroS bound to the Escherichia coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

9TEZ|1|V|A|1801, 9TEZ|1|V|C|1816, 9TEZ|1|V|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TEZ_067 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.1101

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9TEZ|1|V|U|1798
9TEZ|1|V|G|1799
9TEZ|1|V|C|1800
9TEZ|1|V|A|1801
9TEZ|1|V|A|1802
9TEZ|1|V|A|1803
9TEZ|1|V|C|1804
*
9TEZ|1|V|G|1813
9TEZ|1|V|G|1814
9TEZ|1|V|A|1815
9TEZ|1|V|C|1816
9TEZ|1|V|G|1817
9TEZ|1|V|U|1818
9TEZ|1|V|A|1819
9TEZ|1|V|U|1820
9TEZ|1|V|A|1821

Current chains

Chain V

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2