IL_9TI5_009

3D structure

PDB id

9TI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the SSU (postTC-RRF-SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUUAGUAG*CGAAACG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TI5_009 not in the Motif Atlas

Homologous match to IL_7A0S_007

Geometric discrepancy: 0.1192

The information below is about IL_7A0S_007

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_62167.5

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

16

Unit IDs

9TI5|1|A|C|241
9TI5|1|A|U|242
9TI5|1|A|U|243
9TI5|1|A|A|244
9TI5|1|A|G|245
9TI5|1|A|U|246
9TI5|1|A|A|247
9TI5|1|A|G|248
*
9TI5|1|A|C|256
9TI5|1|A|G|257
9TI5|1|A|A|258
9TI5|1|A|A|259
9TI5|1|A|A|260
9TI5|1|A|C|261
9TI5|1|A|G|262

Current chains

Chain A

23S rRNA

Nearby chains

Chain 8

50S ribosomal protein L35

Chain O

50S ribosomal protein L15