IL_9TI5_047
3D structure
- PDB id
- 9TI5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the SSU (postTC-RRF-SSU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUGAGUAG*UGAAAUC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9TI5_047 not in the Motif Atlas
- Homologous match to IL_7A0S_045
- Geometric discrepancy: 0.1085
- The information below is about IL_7A0S_045
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.5
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
9TI5|1|A|G|1300
9TI5|1|A|U|1301
9TI5|1|A|G|1302
9TI5|1|A|A|1303
9TI5|1|A|G|1304
9TI5|1|A|U|1305
9TI5|1|A|A|1306
9TI5|1|A|G|1307
*
9TI5|1|A|U|2038
9TI5|1|A|G|2039
9TI5|1|A|A|2040
9TI5|1|A|A|2041
9TI5|1|A|A|2042
9TI5|1|A|U|2043
9TI5|1|A|C|2044
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 5
- Large ribosomal subunit protein bL32
- Chain I
- 50S ribosomal protein L4
- Chain Q
- 50S ribosomal protein L17
- Chain V
- 50S ribosomal protein L22
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