IL_9TI5_052

3D structure

PDB id

9TI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the SSU (postTC-RRF-SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UAAU*AAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TI5_052 not in the Motif Atlas

Geometric match to IL_8T29_001

Geometric discrepancy: 0.2348

The information below is about IL_8T29_001

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_58355.4

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

45

Unit IDs

9TI5|1|A|U|1448
9TI5|1|A|A|1449
9TI5|1|A|A|1450
9TI5|1|A|U|1451
*
9TI5|1|A|A|1632
9TI5|1|A|A|1633
9TI5|1|A|A|1634
9TI5|1|A|A|1635

Current chains

Chain A

23S rRNA

Nearby chains