IL_9TI5_094

3D structure

PDB id

9TI5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the SSU (postTC-RRF-SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUC*(G7M)CGAG

Length

8 nucleotides

Bulged bases

9TI5|1|A|G|2603, 9TI5|1|A|A|2604

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TI5_094 not in the Motif Atlas

Homologous match to IL_7A0S_089

Geometric discrepancy: 0.1005

The information below is about IL_7A0S_089

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_30722.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

20

Unit IDs

9TI5|1|A|C|2537
9TI5|1|A|U|2538
9TI5|1|A|C|2539
*
9TI5|1|A|G7M|2601
9TI5|1|A|C|2602
9TI5|1|A|G|2603
9TI5|1|A|A|2604
9TI5|1|A|G|2605

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

Large ribosomal subunit protein bL32

Chain H

50S ribosomal protein L3