IL_9TI6_023

3D structure

PDB id

9TI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the LSU (postTC-RRF-LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TI6_023 not in the Motif Atlas

Geometric match to IL_9AXU_029

Geometric discrepancy: 0.0751

The information below is about IL_9AXU_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_15190.4

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

9TI6|1|A|U|748
9TI6|1|A|G|749
9TI6|1|A|A|750
9TI6|1|A|A|751
9TI6|1|A|G|752
*
9TI6|1|A|U|769
9TI6|1|A|G|770
9TI6|1|A|G|771
9TI6|1|A|A|772
9TI6|1|A|G|773

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2