IL_9TI6_058

3D structure

PDB id

9TI6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the LSU (postTC-RRF-LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

AUAG*UGAUU

Length

9 nucleotides

Bulged bases

9TI6|1|A|U|1601

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TI6_058 not in the Motif Atlas

Homologous match to IL_7A0S_053

Geometric discrepancy: 0.3126

The information below is about IL_7A0S_053

Detailed Annotation

tSH-tHW

Broad Annotation

No text annotation

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9TI6|1|A|A|1481
9TI6|1|A|U|1482
9TI6|1|A|A|1483
9TI6|1|A|G|1484
*
9TI6|1|A|U|1598
9TI6|1|A|G|1599
9TI6|1|A|A|1600
9TI6|1|A|U|1601
9TI6|1|A|U|1602

Current chains

Chain A

23S rRNA

Nearby chains