IL_9TI6_071
3D structure
- PDB id
- 9TI6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the LSU (postTC-RRF-LSU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- UGCUAAA*UGAUGUAUA
- Length
- 16 nucleotides
- Bulged bases
- 9TI6|1|A|U|1828, 9TI6|1|A|U|1843, 9TI6|1|A|U|1847
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9TI6_071 not in the Motif Atlas
- Homologous match to IL_7A0S_065
- Geometric discrepancy: 0.1307
- The information below is about IL_7A0S_065
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_17069.6
- Basepair signature
- cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9TI6|1|A|U|1825
9TI6|1|A|G|1826
9TI6|1|A|C|1827
9TI6|1|A|U|1828
9TI6|1|A|A|1829
9TI6|1|A|A|1830
9TI6|1|A|A|1831
*
9TI6|1|A|U|1840
9TI6|1|A|G|1841
9TI6|1|A|A|1842
9TI6|1|A|U|1843
9TI6|1|A|G|1844
9TI6|1|A|U|1845
9TI6|1|A|A|1846
9TI6|1|A|U|1847
9TI6|1|A|A|1848
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain G
- 50S ribosomal protein L2
- Chain a
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: