IL_9TI6_134
3D structure
- PDB id
- 9TI6 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus 70S ribosome with p/E tRNA and RRF oriented towards the LSU (postTC-RRF-LSU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 9TI6|1|a|A|540, 9TI6|1|a|U|542, 9TI6|1|a|A|543
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9TI6_134 not in the Motif Atlas
- Homologous match to IL_6CZR_133
- Geometric discrepancy: 0.2595
- The information below is about IL_6CZR_133
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_54177.3
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9TI6|1|a|G|523
9TI6|1|a|U|524
9TI6|1|a|G|525
9TI6|1|a|C|526
9TI6|1|a|C|527
9TI6|1|a|A|528
9TI6|1|a|G|529
*
9TI6|1|a|C|536
9TI6|1|a|G|537
9TI6|1|a|G|538
9TI6|1|a|U|539
9TI6|1|a|A|540
9TI6|1|a|A|541
9TI6|1|a|U|542
9TI6|1|a|A|543
9TI6|1|a|C|544
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain d
- 30S ribosomal protein S3
- Chain e
- 30S ribosomal protein S4
- Chain m
- 30S ribosomal protein S12
Coloring options: