IL_9TI7_020

3D structure

PDB id

9TI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with E-site tRNA and RRF oriented towards the LSU (postTC-RRF-LSU-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

9TI7|1|A|G|846, 9TI7|1|A|G|850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TI7_020 not in the Motif Atlas

Homologous match to IL_7A0S_015

Geometric discrepancy: 0.12

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.3

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

11

Unit IDs

9TI7|1|A|G|719
9TI7|1|A|A|720
9TI7|1|A|A|721
9TI7|1|A|A|722
9TI7|1|A|C|723
*
9TI7|1|A|G|844
9TI7|1|A|A|845
9TI7|1|A|G|846
9TI7|1|A|A|847
9TI7|1|A|U|848
9TI7|1|A|A|849
9TI7|1|A|G|850
9TI7|1|A|C|851

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L4

Chain O

50S ribosomal protein L15