IL_9TI7_027

3D structure

PDB id

9TI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with E-site tRNA and RRF oriented towards the LSU (postTC-RRF-LSU-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

UGAU*AA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TI7_027 not in the Motif Atlas

Geometric match to IL_9PN5_182

Geometric discrepancy: 0.1919

The information below is about IL_9PN5_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74641.4

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

36

Unit IDs

9TI7|1|A|U|889
9TI7|1|A|G|890
9TI7|1|A|A|891
9TI7|1|A|U|892
*
9TI7|1|A|A|977
9TI7|1|A|A|978

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L30