IL_9TI7_028

3D structure

PDB id

9TI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with E-site tRNA and RRF oriented towards the LSU (postTC-RRF-LSU-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

UGAUG*UUAA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TI7_028 not in the Motif Atlas

Geometric match to IL_4WF9_029

Geometric discrepancy: 0.1564

The information below is about IL_4WF9_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01742.1

Basepair signature

cWW-L-cWW-R-cWW

Number of instances in this motif group

3

Unit IDs

9TI7|1|A|U|889
9TI7|1|A|G|890
9TI7|1|A|A|891
9TI7|1|A|U|892
9TI7|1|A|G|893
*
9TI7|1|A|U|975
9TI7|1|A|U|976
9TI7|1|A|A|977
9TI7|1|A|A|978

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L30