IL_9TI7_040

3D structure

PDB id

9TI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with E-site tRNA and RRF oriented towards the LSU (postTC-RRF-LSU-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

9TI7|1|A|A|1187

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TI7_040 not in the Motif Atlas

Homologous match to IL_7A0S_036

Geometric discrepancy: 0.3112

The information below is about IL_7A0S_036

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

9TI7|1|A|U|1062
9TI7|1|A|U|1063
9TI7|1|A|A|1064
9TI7|1|A|A|1065
9TI7|1|A|G|1066
9TI7|1|A|U|1067
9TI7|1|A|G|1068
*
9TI7|1|A|C|1184
9TI7|1|A|U|1185
9TI7|1|A|A|1186
9TI7|1|A|A|1187
9TI7|1|A|A|1188

Current chains

Chain A

23S rRNA

Nearby chains

Chain 9

50S ribosomal protein L36

Chain M

50S ribosomal protein L13