IL_9TI7_071

3D structure

PDB id

9TI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with E-site tRNA and RRF oriented towards the LSU (postTC-RRF-LSU-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

UAG*CAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TI7_071 not in the Motif Atlas

Geometric match to IL_4KTG_005

Geometric discrepancy: 0.3914

The information below is about IL_4KTG_005

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.4

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

62

Unit IDs

9TI7|1|A|U|1757
9TI7|1|A|A|1758
9TI7|1|A|G|1759
*
9TI7|1|A|C|1770
9TI7|1|A|A|1771
9TI7|1|A|G|1772

Current chains

Chain A

23S rRNA

Nearby chains

Chain a

Small subunit ribosomal RNA; SSU rRNA