IL_9TI7_078

3D structure

PDB id

9TI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with E-site tRNA and RRF oriented towards the LSU (postTC-RRF-LSU-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

AGGAG*CGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TI7_078 not in the Motif Atlas

Homologous match to IL_7A0S_070

Geometric discrepancy: 0.2412

The information below is about IL_7A0S_070

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_15190.4

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

26

Unit IDs

9TI7|1|A|A|1883
9TI7|1|A|G|1884
9TI7|1|A|G|1885
9TI7|1|A|A|1886
9TI7|1|A|G|1887
*
9TI7|1|A|C|1909
9TI7|1|A|G|1910
9TI7|1|A|A|1911
9TI7|1|A|A|1912
9TI7|1|A|U|1913

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

Transfer RNA; tRNA