IL_9TI7_173

3D structure

PDB id

9TI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome with E-site tRNA and RRF oriented towards the LSU (postTC-RRF-LSU-2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

9TI7|1|a|A|1503, 9TI7|1|a|A|1504

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TI7_173 not in the Motif Atlas

Geometric match to IL_2O3X_001

Geometric discrepancy: 0.3159

The information below is about IL_2O3X_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

9TI7|1|a|C|1417
9TI7|1|a|A|1418
9TI7|1|a|C|1419
*
9TI7|1|a|G|1502
9TI7|1|a|A|1503
9TI7|1|a|A|1504
9TI7|1|a|G|1505

Current chains

Chain a

16S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain m

30S ribosomal protein S12