IL_9TI8_021

3D structure

PDB id

9TI8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S ribosome in complex with RRF, EF-G and fusidic acid (50S-RRF-EF-G-FA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.18 Å

Loop

Sequence

UC*GAA

Length

5 nucleotides

Bulged bases

9TI8|1|A|A|809

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TI8_021 not in the Motif Atlas

Homologous match to IL_7A0S_016

Geometric discrepancy: 0.1388

The information below is about IL_7A0S_016

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

175

Unit IDs

9TI8|1|A|U|742
9TI8|1|A|C|743
*
9TI8|1|A|G|808
9TI8|1|A|A|809
9TI8|1|A|A|810

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2