IL_9TI8_034

3D structure

PDB id

9TI8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S ribosome in complex with RRF, EF-G and fusidic acid (50S-RRF-EF-G-FA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.18 Å

Loop

Sequence

UUU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TI8_034 not in the Motif Atlas

Homologous match to IL_7A0S_030

Geometric discrepancy: 0.2133

The information below is about IL_7A0S_030

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_84227.1

Basepair signature

cWW-cWS-cWW

Number of instances in this motif group

20

Unit IDs

9TI8|1|A|U|915
9TI8|1|A|U|916
9TI8|1|A|U|917
*
9TI8|1|A|A|950
9TI8|1|A|G|951
9TI8|1|A|A|952

Current chains

Chain A

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L16