IL_9TI8_044

3D structure

PDB id

9TI8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S ribosome in complex with RRF, EF-G and fusidic acid (50S-RRF-EF-G-FA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.18 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

9TI8|1|A|U|1105

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TI8_044 not in the Motif Atlas

Homologous match to IL_1MMS_003

Geometric discrepancy: 0.1271

The information below is about IL_1MMS_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

9TI8|1|A|G|1103
9TI8|1|A|U|1104
9TI8|1|A|U|1105
9TI8|1|A|G|1106
*
9TI8|1|A|C|1120
9TI8|1|A|A|1121
9TI8|1|A|U|1122
9TI8|1|A|C|1123

Current chains

Chain A

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L16