IL_9TI8_055

3D structure

PDB id

9TI8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S ribosome in complex with RRF, EF-G and fusidic acid (50S-RRF-EF-G-FA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.18 Å

Loop

Sequence

UAAU*AAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TI8_055 not in the Motif Atlas

Geometric match to IL_8T29_001

Geometric discrepancy: 0.2554

The information below is about IL_8T29_001

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_58355.4

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

45

Unit IDs

9TI8|1|A|U|1448
9TI8|1|A|A|1449
9TI8|1|A|A|1450
9TI8|1|A|U|1451
*
9TI8|1|A|A|1632
9TI8|1|A|A|1633
9TI8|1|A|A|1634
9TI8|1|A|A|1635

Current chains

Chain A

23S rRNA

Nearby chains