IL_9TI8_069

3D structure

PDB id

9TI8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 50S ribosome in complex with RRF, EF-G and fusidic acid (50S-RRF-EF-G-FA)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.18 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

9TI8|1|A|G|1743

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TI8_069 not in the Motif Atlas

Homologous match to IL_7A0S_063

Geometric discrepancy: 0.1163

The information below is about IL_7A0S_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.3

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

11

Unit IDs

9TI8|1|A|C|1730
9TI8|1|A|G|1731
9TI8|1|A|U|1732
9TI8|1|A|A|1733
9TI8|1|A|A|1734
9TI8|1|A|C|1735
*
9TI8|1|A|G|1740
9TI8|1|A|G|1741
9TI8|1|A|A|1742
9TI8|1|A|G|1743
9TI8|1|A|A|1744
9TI8|1|A|A|1745
9TI8|1|A|G|1746

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2