IL_9TI9_136

3D structure

PDB id

9TI9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus 70S ribosome in complex with RRF, EF-G and fusidic acid (70S-RRF-EF-G-FA)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.06 Å

Loop

Sequence

CGUAAAG*CG

Length

9 nucleotides

Bulged bases

9TI9|1|a|A|580

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TI9_136 not in the Motif Atlas

Homologous match to IL_6CZR_134

Geometric discrepancy: 0.1571

The information below is about IL_6CZR_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38186.5

Basepair signature

cWW-L-cWW-L-L-R

Number of instances in this motif group

5

Unit IDs

9TI9|1|a|C|577
9TI9|1|a|G|578
9TI9|1|a|U|579
9TI9|1|a|A|580
9TI9|1|a|A|581
9TI9|1|a|A|582
9TI9|1|a|G|583
*
9TI9|1|a|C|889
9TI9|1|a|G|890

Current chains

Chain a

16S rRNA

Nearby chains

Chain f

30S ribosomal protein S5

Chain m

30S ribosomal protein S12

Chain r

30S ribosomal protein S17