IL_9TKO_020

3D structure

PDB id

9TKO (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S pre-initiation complex with IF2 bound (30S PIC-B)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TKO|1|D1|U|409
9TKO|1|D1|G|410
9TKO|1|D1|A|411
9TKO|1|D1|A|412
9TKO|1|D1|G|413
9TKO|1|D1|A|414
9TKO|1|D1|A|415
9TKO|1|D1|G|416
*
9TKO|1|D1|U|427
9TKO|1|D1|G|428
9TKO|1|D1|U|429
9TKO|1|D1|A|430
9TKO|1|D1|A|431
9TKO|1|D1|A|432
9TKO|1|D1|G|433

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AC

Small ribosomal subunit protein uS4

Chain F2

Translation initiation factor IF-2