IL_9TKR_034

3D structure

PDB id

9TKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S elongation competent complex (70S EC)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UAGAG*UGGA

Length

9 nucleotides

Bulged bases

9TKR|1|D1|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TKR_034 not in the Motif Atlas

Homologous match to IL_8B0X_032

Geometric discrepancy: 0.0752

The information below is about IL_8B0X_032

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

42

Unit IDs

9TKR|1|D1|U|662
9TKR|1|D1|A|663
9TKR|1|D1|G|664
9TKR|1|D1|A|665
9TKR|1|D1|G|666
*
9TKR|1|D1|U|740
9TKR|1|D1|G|741
9TKR|1|D1|G|742
9TKR|1|D1|A|743

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AE

Small ribosomal subunit protein bS6, fully modified isoform

Chain AN

Small ribosomal subunit protein uS15

Chain AQ

Small ribosomal subunit protein bS18