IL_9TKR_182

3D structure

PDB id

9TKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S elongation competent complex (70S EC)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

ACCCC*GAACU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TKR_182 not in the Motif Atlas

Homologous match to IL_8B0X_174

Geometric discrepancy: 0.1685

The information below is about IL_8B0X_174

Detailed Annotation

Symmetric double minor groove platform

Broad Annotation

No text annotation

Motif group

IL_58103.15

Basepair signature

cWW-cSH-cWS-L-tSW-R-R-cWW

Number of instances in this motif group

14

Unit IDs

9TKR|1|D3|A|34
9TKR|1|D3|C|35
9TKR|1|D3|C|36
9TKR|1|D3|C|37
9TKR|1|D3|C|38
*
9TKR|1|D3|G|44
9TKR|1|D3|A|45
9TKR|1|D3|A|46
9TKR|1|D3|C|47
9TKR|1|D3|U|48

Current chains

Chain D3

5S Ribosomal RNA

Nearby chains

Chain BE

Large ribosomal subunit protein uL5

Chain BR

Large ribosomal subunit protein uL18

Chain D2

Large subunit ribosomal RNA; LSU rRNA