IL_9TL1_003

3D structure

PDB id

9TL1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of duck RIG-I (delta CARDs) bound to 31-mer RNA mismatched hairpin with 5'ppA-U blunt end mimicking the influenza B virus vRNA promoter (panhandle) and to ADP.

Experimental method

X-RAY DIFFRACTION

Resolution

1.704 Å

Loop

Sequence

UC*GUA

Length

5 nucleotides

Bulged bases

9TL1|1|R|U|6

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TL1_003 not in the Motif Atlas

Geometric match to IL_3MEI_001

Geometric discrepancy: 0.1551

The information below is about IL_3MEI_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

148

Unit IDs

9TL1|1|R|U|26
9TL1|1|R|C|27
*
9TL1|1|R|G|5||A
9TL1|1|R|U|6
9TL1|1|R|A|7

Current chains

Chain R

31-mer RNA hairpin with 5'ppA-U blunt end mimicking the influenza B virus vRNA promoter (panhandle).

Nearby chains

Chain A

RNA helicase