IL_9TM6_001

3D structure

PDB id

9TM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of duck RIG-I (delta CARDs) bound to 31-mer RNA mismatched hairpin with 5'pppG-C blunt end mimicking the influenza A virus vRNA promoter (panhandle) and to ADP.

Experimental method

X-RAY DIFFRACTION

Resolution

1.982 Å

Loop

Sequence

AAC*GCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01003.5

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

238

Unit IDs

9TM6|1|R|A|7
9TM6|1|R|A|8
9TM6|1|R|C|9
*
9TM6|1|R|G|23
9TM6|1|R|C|24
9TM6|1|R|U|25

Current chains

Chain R

31-mer RNA hairpin with 5'pppG-C blunt end mimicking the influenza A virus vRNA promoter (panhandle)

Nearby chains

Chain A

RNA helicase