IL_9TMI_013

3D structure

PDB id

9TMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

9TMI|1|A|U|244, 9TMI|1|A|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TMI_013 not in the Motif Atlas

Homologous match to IL_6CZR_123

Geometric discrepancy: 0.1406

The information below is about IL_6CZR_123

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.2

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

9TMI|1|A|G|242
9TMI|1|A|A|243
9TMI|1|A|U|244
9TMI|1|A|U|245
9TMI|1|A|A|246
9TMI|1|A|G|247
*
9TMI|1|A|C|277
9TMI|1|A|G|278
9TMI|1|A|A|279
9TMI|1|A|C|280
9TMI|1|A|G|281
9TMI|1|A|A|282
9TMI|1|A|U|283
9TMI|1|A|C|284

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12

Chain Q

Small ribosomal subunit protein uS17