IL_9TMI_035

3D structure

PDB id

9TMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

GGGAG*UC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TMI_035 not in the Motif Atlas

Homologous match to IL_6CZR_144

Geometric discrepancy: 0.1339

The information below is about IL_6CZR_144

Detailed Annotation

Left turn

Broad Annotation

Left turn

Motif group

IL_29346.1

Basepair signature

cWW-L-cWW-L-L

Number of instances in this motif group

4

Unit IDs

9TMI|1|A|G|774
9TMI|1|A|G|775
9TMI|1|A|G|776
9TMI|1|A|A|777
9TMI|1|A|G|778
*
9TMI|1|A|U|804
9TMI|1|A|C|805

Current chains

Chain A

16S rRNA

Nearby chains

Chain K

Small ribosomal subunit protein uS11

Chain a

Large subunit ribosomal RNA; LSU rRNA

Chain c

Large ribosomal subunit protein uL2