IL_9TMI_081

3D structure

PDB id

9TMI (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with A- and P-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.08 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

9TMI|1|a|G|801, 9TMI|1|a|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TMI_081 not in the Motif Atlas

Homologous match to IL_7A0S_015

Geometric discrepancy: 0.1109

The information below is about IL_7A0S_015

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_73855.3

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

11

Unit IDs

9TMI|1|a|G|674
9TMI|1|a|A|675
9TMI|1|a|A|676
9TMI|1|a|A|677
9TMI|1|a|C|678
*
9TMI|1|a|G|799
9TMI|1|a|A|800
9TMI|1|a|G|801
9TMI|1|a|A|802
9TMI|1|a|U|803
9TMI|1|a|A|804
9TMI|1|a|G|805
9TMI|1|a|C|806

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain k

Large ribosomal subunit protein uL15