IL_9TNL_107

3D structure

PDB id

9TNL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9TNL|1|a|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TNL_107 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.182

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.3

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

9TNL|1|a|C|1208
9TNL|1|a|U|1209
9TNL|1|a|G|1210
9TNL|1|a|C|1211
9TNL|1|a|G|1212
9TNL|1|a|A|1213
9TNL|1|a|A|1214
9TNL|1|a|G|1215
*
9TNL|1|a|U|1234
9TNL|1|a|G|1235
9TNL|1|a|G|1236
9TNL|1|a|A|1237
9TNL|1|a|G|1238

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

Large ribosomal subunit protein bL20