IL_9TNL_165

3D structure

PDB id

9TNL (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with A/P- and P/E-site tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.11 Å

Loop

Sequence

GAUAAG*CGAAAC

Length

12 nucleotides

Bulged bases

9TNL|1|a|A|2765

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TNL_165 not in the Motif Atlas

Homologous match to IL_7A0S_098

Geometric discrepancy: 0.1395

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9TNL|1|a|G|2737
9TNL|1|a|A|2738
9TNL|1|a|U|2739
9TNL|1|a|A|2740
9TNL|1|a|A|2741
9TNL|1|a|G|2742
*
9TNL|1|a|C|2762
9TNL|1|a|G|2763
9TNL|1|a|A|2764
9TNL|1|a|A|2765
9TNL|1|a|A|2766
9TNL|1|a|C|2767

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL36A

Chain g

Large ribosomal subunit protein uL6

Chain i

Large ribosomal subunit protein uL13