IL_9TT7_086

3D structure

PDB id

9TT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome of WT EBV infected human B-cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

(PSU)CA(A2M)AGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TT7_086 not in the Motif Atlas

Homologous match to IL_9H3G_097

Geometric discrepancy: 0.2019

The information below is about IL_9H3G_097

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65359.4

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9TT7|1|L5|PSU|3701
9TT7|1|L5|C|3702
9TT7|1|L5|A|3703
9TT7|1|L5|A2M|3704
9TT7|1|L5|A|3705
9TT7|1|L5|G|3706
9TT7|1|L5|U|3707
*
9TT7|1|L5|A|3718
9TT7|1|L5|A|3719
9TT7|1|L5|U|3720
9TT7|1|L5|G|3721
9TT7|1|L5|A|3722
9TT7|1|L5|A|3723
9TT7|1|L5|G|3724

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Li

60S ribosomal protein L36

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain S6

E-site tRNA