IL_9TT7_088
3D structure
- PDB id
- 9TT7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome of WT EBV infected human B-cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- C(5MC)AA(A2M)UGCCUC(OMG)*(OMC)GCG
- Length
- 16 nucleotides
- Bulged bases
- 9TT7|1|L5|A2M|3771, 9TT7|1|L5|C|3777, 9TT7|1|L5|C|3796
- QA status
- Modified nucleotides: 5MC, A2M, OMG, OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9TT7|1|L5|C|3767
9TT7|1|L5|5MC|3768
9TT7|1|L5|A|3769
9TT7|1|L5|A|3770
9TT7|1|L5|A2M|3771
9TT7|1|L5|U|3772
9TT7|1|L5|G|3773
9TT7|1|L5|C|3774
9TT7|1|L5|C|3775
9TT7|1|L5|U|3776
9TT7|1|L5|C|3777
9TT7|1|L5|OMG|3778
*
9TT7|1|L5|OMC|3794
9TT7|1|L5|G|3795
9TT7|1|L5|C|3796
9TT7|1|L5|G|3797
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain Ln
- 60S ribosomal protein L41
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
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