IL_9TT7_116
3D structure
- PDB id
- 9TT7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosome of WT EBV infected human B-cells
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9TT7_116 not in the Motif Atlas
- Homologous match to IL_8GLP_159
- Geometric discrepancy: 0.0554
- The information below is about IL_8GLP_159
- Detailed Annotation
- Sarcin-Ricin target in LSU H95; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_34443.2
- Basepair signature
- cWW-L-R-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
9TT7|1|L5|C|4582
9TT7|1|L5|U|4583
9TT7|1|L5|C|4584
9TT7|1|L5|A|4585
9TT7|1|L5|G|4586
9TT7|1|L5|U|4587
9TT7|1|L5|A|4588
9TT7|1|L5|C|4589
*
9TT7|1|L5|G|4594
9TT7|1|L5|G|4595
9TT7|1|L5|A|4596
9TT7|1|L5|A|4597
9TT7|1|L5|C|4598
9TT7|1|L5|C|4599
9TT7|1|L5|G|4600
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LB
- Large ribosomal subunit protein uL3
- Chain LH
- 60S ribosomal protein L9
- Chain LV
- 60S ribosomal protein L23
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