IL_9TT7_208

3D structure

PDB id

9TT7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosome of WT EBV infected human B-cells

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

UAC*GCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TT7_208 not in the Motif Atlas

Homologous match to IL_9H3G_231

Geometric discrepancy: 0.2786

The information below is about IL_9H3G_231

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81485.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

32

Unit IDs

9TT7|1|S2|U|1560
9TT7|1|S2|A|1561
9TT7|1|S2|C|1562
*
9TT7|1|S2|G|1573
9TT7|1|S2|C|1574
9TT7|1|S2|G|1575

Current chains

Chain S2

18S rRNA

Nearby chains

Chain ST

Small ribosomal subunit protein eS19