IL_9TV2_045
3D structure
- PDB id
- 9TV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- CGGUAA*(PSU)AAAUG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9TV2|1|L5|C|1728
9TV2|1|L5|G|1729
9TV2|1|L5|G|1730
9TV2|1|L5|U|1731
9TV2|1|L5|A|1732
9TV2|1|L5|A|1733
*
9TV2|1|L5|PSU|1788
9TV2|1|L5|A|1789
9TV2|1|L5|A|1790
9TV2|1|L5|A|1791
9TV2|1|L5|U|1792
9TV2|1|L5|G|1793
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain L7
- 5S ribosomal RNA; 5S rRNA
- Chain LD
- 60S ribosomal protein L5
- Chain LF
- Large ribosomal subunit protein uL30
- Chain LI
- 60S ribosomal protein L10-like
- Chain LS
- 60S ribosomal protein L18a
- Chain LT
- 60S ribosomal protein L21
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