IL_9TV2_064

3D structure

PDB id

9TV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GUAGU(A2M)(OMG)*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TV2_064 not in the Motif Atlas

Homologous match to IL_8GLP_300

Geometric discrepancy: 0.036

The information below is about IL_8GLP_300

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_02666.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

19

Unit IDs

9TV2|1|L5|G|2348
9TV2|1|L5|U|2349
9TV2|1|L5|A|2350
9TV2|1|L5|G|2351
9TV2|1|L5|U|2352
9TV2|1|L5|A2M|2353
9TV2|1|L5|OMG|2354
*
9TV2|1|L5|C|3844
9TV2|1|L5|G|3845
9TV2|1|L5|A|3846
9TV2|1|L5|A|3847
9TV2|1|L5|A|3848
9TV2|1|L5|C|3849

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4

Chain LP

60S ribosomal protein L17