IL_9TV2_113

3D structure

PDB id

9TV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

9TV2|1|L5|C|4706

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TV2_113 not in the Motif Atlas

Homologous match to IL_8GLP_158

Geometric discrepancy: 0.0308

The information below is about IL_8GLP_158

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_46211.1

Basepair signature

cWW-tWW-tHS-cWW

Number of instances in this motif group

2

Unit IDs

9TV2|1|L5|C|4568
9TV2|1|L5|C|4569
9TV2|1|L5|A|4570
9TV2|1|L5|U|4571
*
9TV2|1|L5|A|4703
9TV2|1|L5|G|4704
9TV2|1|L5|G|4705
9TV2|1|L5|C|4706
9TV2|1|L5|G|4707

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LO

60S ribosomal protein L13a