IL_9TV2_124

3D structure

PDB id

9TV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

(PSU)(PSU)CG*CCUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TV2_124 not in the Motif Atlas

Homologous match to IL_9H3G_140

Geometric discrepancy: 0.1523

The information below is about IL_9H3G_140

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

43

Unit IDs

9TV2|1|L5|PSU|4957
9TV2|1|L5|PSU|4958
9TV2|1|L5|C|4959
9TV2|1|L5|G|4960
*
9TV2|1|L5|C|4968
9TV2|1|L5|C|4969
9TV2|1|L5|U|4970
9TV2|1|L5|G|4971

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

Large ribosomal subunit protein uL3

Chain LP

60S ribosomal protein L17