IL_9TV2_137

3D structure

PDB id

9TV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GACG*CGC

Length

7 nucleotides

Bulged bases

9TV2|1|L7|C|84

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TV2_137 not in the Motif Atlas

Geometric match to IL_8QYX_171

Geometric discrepancy: 0.0192

The information below is about IL_8QYX_171

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.6

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

241

Unit IDs

9TV2|1|L7|G|82
9TV2|1|L7|A|83
9TV2|1|L7|C|84
9TV2|1|L7|G|85
*
9TV2|1|L7|C|92
9TV2|1|L7|G|93
9TV2|1|L7|C|94

Current chains

Chain L7

5S rRNA

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LF

Large ribosomal subunit protein uL30

Chain LI

60S ribosomal protein L10-like

Chain LS

60S ribosomal protein L18a