IL_9TV2_150

3D structure

PDB id

9TV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GGAUAAC*GCUAA(OMU)A(OMC)

Length

15 nucleotides

Bulged bases

9TV2|1|S2|OMU|172

QA status

Modified nucleotides: OMU, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9TV2|1|S2|G|145
9TV2|1|S2|G|146
9TV2|1|S2|A|147
9TV2|1|S2|U|148
9TV2|1|S2|A|149
9TV2|1|S2|A|150
9TV2|1|S2|C|151
*
9TV2|1|S2|G|167
9TV2|1|S2|C|168
9TV2|1|S2|U|169
9TV2|1|S2|A|170
9TV2|1|S2|A|171
9TV2|1|S2|OMU|172
9TV2|1|S2|A|173
9TV2|1|S2|OMC|174

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SG

40S ribosomal protein S6

Chain SY

40S ribosomal protein S24