IL_9TV2_154
3D structure
- PDB id
- 9TV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- UAUCAA*UGACCACG
- Length
- 14 nucleotides
- Bulged bases
- 9TV2|1|S2|U|361, 9TV2|1|S2|C|399, 9TV2|1|S2|C|400
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9TV2|1|S2|U|359
9TV2|1|S2|A|360
9TV2|1|S2|U|361
9TV2|1|S2|C|362
9TV2|1|S2|A|363
9TV2|1|S2|A|364
*
9TV2|1|S2|U|396
9TV2|1|S2|G|397
9TV2|1|S2|A|398
9TV2|1|S2|C|399
9TV2|1|S2|C|400
9TV2|1|S2|A|401
9TV2|1|S2|C|402
9TV2|1|S2|G|403
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain SI
- 40S ribosomal protein S8
- Chain SL
- Small ribosomal subunit protein uS17
- Chain SX
- 40S ribosomal protein S23
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