IL_9TV2_165
3D structure
- PDB id
- 9TV2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.1 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUUC
- Length
- 16 nucleotides
- Bulged bases
- 9TV2|1|S2|A|628, 9TV2|1|S2|U|630, 9TV2|1|S2|U|631
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9TV2|1|S2|G|611
9TV2|1|S2|U|612
9TV2|1|S2|G|613
9TV2|1|S2|C|614
9TV2|1|S2|C|615
9TV2|1|S2|A|616
9TV2|1|S2|G|617
*
9TV2|1|S2|C|624
9TV2|1|S2|G|625
9TV2|1|S2|G|626
9TV2|1|S2|U|627
9TV2|1|S2|A|628
9TV2|1|S2|A|629
9TV2|1|S2|U|630
9TV2|1|S2|U|631
9TV2|1|S2|C|632
Current chains
- Chain S2
- 18S rRNA
Nearby chains
- Chain SD
- 40S ribosomal protein S3
- Chain SX
- 40S ribosomal protein S23
- Chain Se
- FAU ubiquitin like and ribosomal protein S30 fusion
Coloring options: