IL_9TV2_209

3D structure

PDB id

9TV2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S ribosomes from primary B-cells infected with delta v-snoRNA1 EBV

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TV2_209 not in the Motif Atlas

Homologous match to IL_9PN5_222

Geometric discrepancy: 0.0758

The information below is about IL_9PN5_222

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.7

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

240

Unit IDs

9TV2|1|S2|G|1706
9TV2|1|S2|U|1707
9TV2|1|S2|C|1708
*
9TV2|1|S2|G|1826
9TV2|1|S2|U|1827
9TV2|1|S2|C|1828

Current chains

Chain S2

18S rRNA

Nearby chains

Chain Ln

60S ribosomal protein L41