IL_9TZ5_026

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

GA*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZ5_026 not in the Motif Atlas

Homologous match to IL_7A0S_028

Geometric discrepancy: 0.1111

The information below is about IL_7A0S_028

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

68

Unit IDs

9TZ5|1|a|G|868
9TZ5|1|a|A|869
*
9TZ5|1|a|U|919
9TZ5|1|a|C|920
9TZ5|1|a|C|921

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 8

Large ribosomal subunit protein bL27

Chain b

5S ribosomal RNA; 5S rRNA

Chain s

Large ribosomal subunit protein uL16