IL_9TZ5_042

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

GUUU*AC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZ5_042 not in the Motif Atlas

Geometric match to IL_9H3G_197

Geometric discrepancy: 0.099

The information below is about IL_9H3G_197

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_74641.3

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

36

Unit IDs

9TZ5|1|a|G|1320
9TZ5|1|a|U|1321
9TZ5|1|a|U|1322
9TZ5|1|a|U|1323
*
9TZ5|1|a|A|1618
9TZ5|1|a|C|1619

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain 7

Large ribosomal subunit protein uL23

Chain y

Large ribosomal subunit protein bL34