IL_9TZ5_051

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

9TZ5|1|a|U|1533

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZ5_051 not in the Motif Atlas

Geometric match to IL_8B0X_118

Geometric discrepancy: 0.061

The information below is about IL_8B0X_118

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.5

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9TZ5|1|a|U|1478
9TZ5|1|a|A|1479
9TZ5|1|a|A|1480
9TZ5|1|a|G|1481
*
9TZ5|1|a|U|1530
9TZ5|1|a|G|1531
9TZ5|1|a|A|1532
9TZ5|1|a|U|1533
9TZ5|1|a|G|1534

Current chains

Chain a

23S ribosomal RNA

Nearby chains