IL_9TZ5_055

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CGAAG*CAAAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZ5_055 not in the Motif Atlas

Geometric match to IL_4WF9_073

Geometric discrepancy: 0.2462

The information below is about IL_4WF9_073

Detailed Annotation

UAA/GAN with extra stack

Broad Annotation

No text annotation

Motif group

IL_89021.4

Basepair signature

cWW-L-R-L-R-tHS-cWW

Number of instances in this motif group

8

Unit IDs

9TZ5|1|a|C|1536
9TZ5|1|a|G|1537
9TZ5|1|a|A|1538
9TZ5|1|a|A|1539
9TZ5|1|a|G|1540
*
9TZ5|1|a|C|1557
9TZ5|1|a|A|1558
9TZ5|1|a|A|1559
9TZ5|1|a|A|1560
9TZ5|1|a|G|1561

Current chains

Chain a

23S ribosomal RNA

Nearby chains