IL_9TZ5_063

3D structure

PDB id

9TZ5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Triple Stack Doxycycline Bound 50S Subunit of the Coxiella burnetii Ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

UGGUAA*UGAAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9TZ5_063 not in the Motif Atlas

Geometric match to IL_4LFB_018

Geometric discrepancy: 0.1024

The information below is about IL_4LFB_018

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_82100.1

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9TZ5|1|a|U|1727
9TZ5|1|a|G|1728
9TZ5|1|a|G|1729
9TZ5|1|a|U|1730
9TZ5|1|a|A|1731
9TZ5|1|a|A|1732
*
9TZ5|1|a|U|1756
9TZ5|1|a|G|1757
9TZ5|1|a|A|1758
9TZ5|1|a|A|1759
9TZ5|1|a|A|1760

Current chains

Chain a

23S ribosomal RNA

Nearby chains